Changes for page Working with HDC Datasets

Last modified by Dennis Segebarth on 2024/10/02 18:25
From version 1.4
edited by Susan Evans
on 2023/07/11 14:47
Change comment: (Autosaved)
To version 1.10
edited by Susan Evans
on 2023/07/11 14:59
Change comment: (Autosaved)

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26 26  
27 27  [[image:Main Menu Datasets NonAdmin v2.26 2023-04-12.png||height="5%" width="50%"]]
28 28  
29 +
29 29  1. Click **Datasets** from the Main Menu to open the Datasets landing page. Datasets you previously created are displayed in this page in the “My Datasets” tab, and you can continue working on them as described in the following sections of this article, e.g. see //Adding Files to a Dataset//.
30 30  1. Click **+ Create New** in the upper right-hand corner. You will be prompted to provide some essential metadata information about your dataset in two sections (“Define Dataset” and “Description”, see the following list for more details):
31 31  Note: this information is stored in the Dataset’s Essential schema and is visible in the Dataset Home tab, and can be changed later (with the exception of Dataset Code) - see //Reviewing and Editing Metadata Annotations//. Mandatory fields are denoted by a red asterisk ( * ).
32 32  11. Define Dataset
33 -11*. item 3
34 +11*. //Title//*: A short title for the Dataset (max. 100 characters). This entry can be changed later.
35 +11*. //Dataset Code//*: A distinct, immutable code defined by you to uniquely identify your Dataset. This entry cannot be changed later.
36 +11*. //Authors//*: One or more authors. Hit **Enter** after each entry. These entries can be changed later.
37 +11*. //Dataset Type//: Use the default **GENERAL** or, if your Dataset uses the Brain Imaging Data Structure (BIDS) standard and you wish to use the built-in BIDS validation tool, select **BIDS** from the dropdown menu. This entry can be changed later.
38 +11. Description:
39 +11*. //Dataset Description//*: A longer description of the dataset. Please remember to comply with the Platform Terms of Use, Privacy Policy, and do not enter sensitive personal information in this field.
40 +11*. //Modality//: Based on the Human Brain Project OpenMINDS standard.
41 +11*. //Collection Method//: Based on the Human Brain Project OpenMINDS standard.
42 +11*. //License//: License under which you want to share your Dataset (e.g., Creative Commons). A License is not required, yet highly recommended if you want to share your Dataset in compliance with the FAIR criteria.
43 +11*. //Tags//: Custom keywords you create for your Dataset. Tags are displayed on the Datasets landing page and information bar.
44 +1. When you provided all required information, click Create in the upper right-hand corner to complete the Dataset creation.
34 34  
35 -
36 -
37 -
38 -111*.Title: A short title for the Dataset (max. 100 characters). This entry can be changed later.
39 -11*.Dataset Code: A distinct, immutable code defined by you to uniquely identify your Dataset. This entry cannot be changed later.
40 -1** //Authors*//: One or more authors. Hit **Enter** after each entry. These entries can be changed later.
41 -11* //Dataset Type//: Use the default **GENERAL** or, if your Dataset uses the Brain Imaging Data Structure (BIDS) standard and you wish to use the built-in BIDS validation tool, select **BIDS **from the dropdown menu.  This entry can be changed later.
42 -11.Description:
43 -11*//Dataset Description*//:** **A longer description of the dataset. Please remember to comply with the Platform Terms of Use, Privacy Policy, and do not enter sensitive personal information in this field.
44 -11* //Modality//: Based on the Human Brain Project [[OpenMINDS>>url:http://github.com/HumanBrainProject/openMINDS]] standard.
45 -11* //Collection Method//: Based on the Human Brain Project [[OpenMINDS>>url:http://github.com/HumanBrainProject/openMINDS]] standard.
46 -11* //License//: License under which you want to share your Dataset (e.g., Creative Commons). A License is not required, yet highly recommended if you want to share your Dataset in compliance with the FAIR criteria.
47 -11* //Tags//: Custom keywords you create for your Dataset.  Tags are displayed on the Datasets landing page and information bar.
48 -1. When you provided all required information, click **Create** in the upper right-hand corner to complete the Dataset creation.
49 -
50 50  Your Dataset is now saved and is visible in the Datasets landing page under My Dataset. Next, you can go to a Project and begin copying files into the Dataset, as described below in the section //Adding Files to a Dataset.//
51 51  
48 +
52 52  = Adding Files to a Dataset =
53 53  
54 54  As mentioned above, each Dataset is associated to a single Project. Therefore, files can be added to a Dataset only from the Core of the respective Project. This will create a copy of the file so the original file in the Core is unaffected by subsequent manipulations inside the Dataset. The Dataset must have already been created before files can be added (see //Creating a Dataset//).
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134 134  
135 135  1. Open the Dataset from the Datasets landing page and select the **Metadata **tab.
136 136  1. Under **Existing Schema**, select **Default Schemas**. The schemas that have already been completed in part or full are listed in the left panel, and their details are displayed in the right panel. This includes the Essential schema template with the information you entered at the time the Dataset was created.
137 -1. In the **Schemas **section on the right panel, click the **Select schema to complete **dropdown menu and select one of the Default schema templates or a Custom Schema created by you (see the section //Creating a Custom Schema //in this article).
134 +1. (((
135 +In the **Schemas **section on the right panel, click the **Select schema to complete **dropdown menu and select one of the Default schema templates or a Custom Schema created by you (see the section //Creating a Custom Schema //in this article).
138 138  
139 139  [[image:Datasets Metadata Default Schema v2.1.5 2023-01-25.png||height="38%" width="50%"]]
140 140  
141 -1. (((
142 142  Default schema categories include the following:
143 143  
144 144  * //Contributors//: Information about the persons or organizations who contributed to the Dataset.
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160 160  
161 161  1. Navigate to **Existing Schema**// //(left panel of the Metadata tab) and select the **Default Schemas** category.
162 162  1. Click the schema name, then click the eye icon to open the Schemas view (right side). The existing entries are displayed in the **Schemas **panel at the right side.
163 -1. (((
164 -To edit the entries, click **Edit** and make the changes, and.
160 +1. To edit the entries, click **Edit** and make the changes, and
161 +1*. **X Reset** to return all entries to their original values.
162 +1*. **Cancel **to exit without saving changes.
163 +1*. **Update** to save the changes and return to the schema view.
165 165  
166 -1. **X Reset** to return all entries to their original values.
167 -1. **Cancel **to exit without saving changes.
168 -1. **Update** to save the changes and return to the schema view.
169 -)))
170 -
171 171  Any new changes are reflected in the Schemas view.
172 172  
173 173  == Creating a Custom Schema template ==
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210 210  1. Navigate to **Existing Schema**// //(left panel of the **Metadata **tab) and select the **Default Schema** category.
211 211  1. Click the Custom schema name, then click the **eye icon** to open the Schemas view (right side). The existing entries are displayed.
212 212  1. Click **Manage Template**.
213 -1. (((
214 -Make your desired edits. The following changes are possible:
215 -
216 -1. Add new fields
217 -1. Delete existing fields
218 -1. Change an existing field from required to optional
219 -)))
207 +1. Make your desired edits. The following changes are possible:
208 +1*. Add new fields
209 +1*. Delete existing fields
210 +1*. Change an existing field from required to optional
220 220  1. Give the updated Schema template a new name, e.g., {name} version 2.
221 221  1. Click **+ Create New Template**.
222 222