Changes for page Using JupyterHub in HDC

Last modified by Dennis Segebarth on 2024/10/02 18:14
From version 1.6
edited by Susan Evans
on 2023/07/11 14:00
Change comment: (Autosaved)
To version 1.4
edited by Susan Evans
on 2023/07/11 13:50
Change comment: (Autosaved)

Summary

Details

Page properties
Content
... ... @@ -313,48 +313,5 @@
313 313  Yes
314 314  )))
315 315  
316 -== Downloading Project Data to JupyterHub using the Pilot Command Line Interface ==
317 317  
318 -After logging into the Pilot Command Line Interface, you can download data from the Project Core into the JupyterHub environment to start your data analyses.
319 -
320 -File related commands are grouped in the {{code}}file{{/code}} category. To view the full list of commands in this category, type {{code}}pilotcli file --help{{/code}}. To download project data, use the file sync command. To view the full list of commands in this category, type {{code}}pilotcli file sync --help{{/code}}.
321 -
322 -
323 -{{code language="none"}}
324 -collaborator4@jupyter-collaborator4:~$ pilotcli file sync --help
325 -Usage: pilotcli file sync [OPTIONS] [PATHS]... OUTPUT_PATH
326 -
327 - Download files/folders from a given Project/folder/file in core zone.
328 -
329 -Options:
330 - -z, --zone TEXT Target Zone (i.e., core/greenroom)
331 - --zip Download files as a zip.
332 - -i, --geid Enable downloading by geid.
333 - --help Show this message and exit.
334 -{{/code}}
335 -
336 -=== Example ===
337 -
338 -Downloading a file from the Core to your Home Directory:
339 -
340 -Reminder: Please follow Linux conventions for file management. If your filename contains spaces, wrap it in single or double quotes.
341 -
342 -* //Filename~:// “Chemical Tracking Data.csv”
343 -* //Source~:// Project “Indoc Test Project”, “Core” storage zone, folder “collaborator4” indoctestproject/collaborator4/Chemical Tracking Data.csv -z core
344 -* //Destination: //user's Home directory in the Guacamole or JupyterHub VM .
345 -* //Command group/option: //file sync
346 -
347 -{{code language="none"}}
348 -collaborator4@jupyter-collaborator4:~$ pilotcli file sync indoctestproject/collaborator4/'Chemical Tracking Data.csv' . -z core
349 -start downloading...
350 -Downloading Chemical Tracking Data.csv |██████████████████████████████ 100% 00:00
351 -File has been downloaded successfully and saved to: ./Chemical Tracking Data.csv
352 -{{/code}}
353 -
354 -
355 -
356 -
357 -
358 -To confirm successful download, type ls and verify the file {{code}}Chemical Tracking Data.csv{{/code}} is stored in the Home folder.
359 -
360 -[[image:Jupyter downloaded file in Home folder v2.4.11 2023-05-25 1850.png||height="15%" width="50%"]]
317 +
Jupyter downloaded file in Home folder v2.4.11 2023-05-25 1850.png
Author
... ... @@ -1,1 +1,0 @@
1 -XWiki.sgevans
Size
... ... @@ -1,1 +1,0 @@
1 -35.0 KB
Content