Changes for page Using JupyterHub in HDC
Last modified by Dennis Segebarth on 2024/10/02 18:14
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... ... @@ -291,14 +291,26 @@ 291 291 292 292 When using the Pilot Command Line Interface in JupyterHub and the following actions are possible on the derivative files generated in JupyterHub: 293 293 294 +{table} 295 +**File Operation** | **Permitted in the ** 296 +**Green Room** 297 +Word 1 | Word 2 298 +{table} 299 + 294 294 |=(% colspan="1" rowspan="1" %)((( 295 295 **File Operation** 302 + 303 + 296 296 )))|=(% colspan="1" rowspan="1" %)((( 297 297 **Permitted in the ** 298 -**Green Room** 306 +**Green Room** 307 + 308 + 299 299 )))|=(% colspan="1" rowspan="1" %)((( 300 300 **Permitted in the ** 301 -**Core** 311 +**Core** 312 + 313 + 302 302 ))) 303 303 |(% colspan="1" rowspan="1" %)File upload 304 304 (upload derivative output files from JupyterHub to the Green Room or Core storage)|(% colspan="1" rowspan="1" %)((( ... ... @@ -313,48 +313,6 @@ 313 313 Yes 314 314 ))) 315 315 316 -== Downloading Project Data to JupyterHub using the Pilot Command Line Interface == 317 317 318 -After logging into the Pilot Command Line Interface, you can download data from the Project Core into the JupyterHub environment to start your data analyses. 319 319 320 -File related commands are grouped in the {{code}}file{{/code}} category. To view the full list of commands in this category, type {{code}}pilotcli file --help{{/code}}. To download project data, use the file sync command. To view the full list of commands in this category, type {{code}}pilotcli file sync --help{{/code}}. 321 - 322 - 323 -{{code language="none"}} 324 -collaborator4@jupyter-collaborator4:~$ pilotcli file sync --help 325 -Usage: pilotcli file sync [OPTIONS] [PATHS]... OUTPUT_PATH 326 - 327 - Download files/folders from a given Project/folder/file in core zone. 328 - 329 -Options: 330 - -z, --zone TEXT Target Zone (i.e., core/greenroom) 331 - --zip Download files as a zip. 332 - -i, --geid Enable downloading by geid. 333 - --help Show this message and exit. 334 -{{/code}} 335 - 336 -=== Example === 337 - 338 -Downloading a file from the Core to your Home Directory: 339 - 340 -Reminder: Please follow Linux conventions for file management. If your filename contains spaces, wrap it in single or double quotes. 341 - 342 -* //Filename~:// “Chemical Tracking Data.csv” 343 -* //Source~:// Project “Indoc Test Project”, “Core” storage zone, folder “collaborator4” indoctestproject/collaborator4/Chemical Tracking Data.csv -z core 344 -* //Destination: //user's Home directory in the Guacamole or JupyterHub VM . 345 -* //Command group/option: //file sync 346 - 347 -{{code language="none"}} 348 -collaborator4@jupyter-collaborator4:~$ pilotcli file sync indoctestproject/collaborator4/'Chemical Tracking Data.csv' . -z core 349 -start downloading... 350 -Downloading Chemical Tracking Data.csv |██████████████████████████████ 100% 00:00 351 -File has been downloaded successfully and saved to: ./Chemical Tracking Data.csv 352 -{{/code}} 353 - 354 - 355 - 356 - 357 - 358 -To confirm successful download, type ls and verify the file {{code}}Chemical Tracking Data.csv{{/code}} is stored in the Home folder. 359 - 360 -[[image:Jupyter downloaded file in Home folder v2.4.11 2023-05-25 1850.png||height="15%" width="50%"]] 330 +
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